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Bug 2641 - Error in ft_checkconfig using ft_spiketriggeredspectrum
| Status | CLOSED FIXED |
| Reported | 2014-07-08 19:17:00 +0200 |
| Modified | 2015-07-15 13:31:23 +0200 |
| Product: | FieldTrip |
| Component: | spike |
| Version: | unspecified |
| Hardware: | PC |
| Operating System: | Linux |
| Importance: | P5 normal |
| Assigned to: | Jan-Mathijs Schoffelen |
| URL: | |
| Tags: | |
| Depends on: | |
| Blocks: | |
| See also: | http://bugzilla.fcdonders.nl/show_bug.cgi?id=2674 |
Thomas Wunderle - 2014-07-08 19:17:54 +0200
I'm trying to use "ft_spiketriggeredspectrum" to compute the phase of the LFP around a spike for a subsequent PPC analysis. Using the following code, cfg = []; cfg.method = 'mtmconvol'; cfg.foi = [2:2:100] cfg.t_ftimwin = (1./cfg.foi)*3; [sts] = ft_spiketriggeredspectrum(cfg,lfp,FT_Spike); I get the error: ??? Error using ==> ft_checkconfig at 205 The field cfg.progress is not allowed Error in ==> ft_spiketriggeredspectrum_convol at 135 cfg = ft_checkconfig(cfg, 'allowed', {'taper', 'borderspikes', 't_ftimwin', 'foi', 'spikechannel', 'channel', 'taperopt', 'rejectsaturation','tapsmofrq', 'warning'}); Error in ==> LaminarCoherence_Spike1 at 403 [sts] = ft_spiketriggeredspectrum_convol(cfg,lfp,FT_Spike); %%%------------------------------------------------------------------ It seems that in ft_checkconfig the string 'progress' is missing. adding 'progress' to the code below fixes the bug for me -> Code from ft_checkconfig % % check for required fields, give error when missing %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% if ~isempty(allowed) % there are some general options that should always be allowed allowed = union(allowed, { 'trackconfig' 'checkconfig' 'checksize' 'showcallinfo' 'trackcallinfo' 'trackdatainfo' 'trackparaminfo' 'debug' ---> 'progress' }); fieldsused = fieldnames(cfg); [c, i] = setdiff(fieldsused, allowed); if ~isempty(c) error('The field cfg.%s is not allowed\n', c{1}); end end %%%----------------------------------------------------------------------------- Best, Thomas
Thomas Wunderle - 2014-07-10 11:13:02 +0200
P.S. FieldTrip version r8941 does not produce the error.