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Bug 2787 - implement compiled ft_standalone and allow it to be called from qsubcellfun

Reported 2014-12-18 10:15:00 +0100
Modified 2019-08-10 12:37:04 +0200
Product: FieldTrip
Component: core
Version: unspecified
Hardware: PC
Operating System: Mac OS
Importance: P5 normal
Assigned to: Robert Oostenveld
Depends on:
See also:

Robert Oostenveld - 2014-12-18 10:15:31 +0100

as discussed with Marcel (CC). This should mimic the spm_standalone interface, and possibly merge that with the interface from the compiled megconnectome (from HCP). Here is a snippet from my email. Ik kan wel eens een ft_standalone maken als proof of principle. En vervolgens kunnen we die ft_standalone en spm_standalone samenvoegen zodat alle verschillende entry-points mogelijk zijn: 1 eval(fread(script)) 2 load input.mat && qsubexec(argin, optin) 3 spm_jobman(input.mat) 4 start de gui

Robert Oostenveld - 2016-01-19 12:18:53 +0100

I have moved the already implemented code from my dirty svn copy over to a branch in my personal development version on

Robert Oostenveld - 2017-06-02 11:38:30 +0200

for reference (and to get Roemer involved), see also

Robert Oostenveld - 2018-06-28 10:27:03 +0200

I discussed this over breakfast with Jesper (now CCed). The code that I already implemented is in this branch It seems clean, so no reason to postpone the merge and to start using it.

Robert Oostenveld - 2018-06-28 12:08:26 +0200

sorry, I CCed the wrong person on this. I will remove Jesper again.

Robert Oostenveld - 2018-06-28 12:08:57 +0200

[bug2787-standalone ca5b8741c] renamed command-line startup script for compiled version, updated documentation 3 files changed, 73 insertions(+), 47 deletions(-) create mode 100755 bin/ delete mode 100755 bin/

Robert Oostenveld - 2018-06-28 12:13:07 +0200

I merged it in the master branch and release. I will do a bit of testing myself, but important is that it gets tested by others as well.

Robert Oostenveld - 2019-08-10 12:37:04 +0200

This closes a whole series of bugs that have been resolved (either FIXED/WONTFIX/INVALID) for quite some time. If you disagree, please file a new issue on