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Bug 1936 - warning .img file couldn't be opened when ft_volumesegment is used

Reported 2013-01-17 15:05:00 +0100
Modified 2013-02-23 20:57:14 +0100
Product: FieldTrip
Component: core
Version: unspecified
Hardware: PC
Operating System: Linux
Importance: P3 normal
Assigned to: Jan-Mathijs Schoffelen
Depends on:
See also:

Lilla Magyari - 2013-01-17 15:05:17 +0100

when I run /test/test_ft_volumesegment.m I get this warning on the screen: Warning: could not open /tmp/tpe0dcbe0a_8044_4c4e_b0b9_39b41b6c066a.img > In fileio/private/warning_once at 116 In fileio/private/filetype_check_header at 54 In ft_filetype at 328 In ft_write_mri at 54 In ft_volumesegment at 293 In test_ft_volumesegment at 26 Lilla

Jan-Mathijs Schoffelen - 2013-01-29 12:20:31 +0100

cause: ft_filetype calls filetype_check_header which fails to find the specified file, because it does not exist yet (the call to ft_filetype occurs in ft_write_volume (called from align_ctf2spm), because SPM needs to temporarily write the volumes). Explicitly providing the dataformat in the call to ft_write_volume gets rid of the warning.

Jan-Mathijs Schoffelen - 2013-01-29 12:22:30 +0100

added dataformat as input to ft_write_mri in revision 7420, for align_ctf2spm and align_itab2spm

Jan-Mathijs Schoffelen - 2013-02-15 16:30:09 +0100

bash-3.2$ svn commit ft_volumerealign.m ft_volumesegment.m utilities/private/align_ctf2spm.m utilities/private/align_itab2spm.m Sending ft_volumerealign.m Sending ft_volumesegment.m Sending utilities/private/align_ctf2spm.m Sending utilities/private/align_itab2spm.m Transmitting file data .... Committed revision 7479. These files needed to be changed, too.